Huang, Sichao; Herzschuh, Ulrike; Pestryakova, Luidmila A; Zimmermann, Heike Hildegard; Davydova, Paraskovya V; Biskaborn, Boris K; Shevtsova, Iuliia; Stoof-Leichsenring, Kathleen Rosmarie; Huang, S (2020): Genetic and morphologic data of diatoms from Arctic surface sediments [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.917561
Always quote citation above when using data! You can download the citation in several formats below.
Abstract:
Lakes cover large parts of the climatically sensitive Arctic landscape and respond rapidly to environmental change. Freshwater diatoms dominate the primary producer community in these lakes and can be used to detect biotic responses to climate and environmental change. We used specific diatom metabarcoding on sedimentary DNA, combined with next-generation sequencing and diatom morphology, to assess diatom diversity in five glacial and 15 thermokarst lakes within the easternmost expanse of the Siberian treeline ecotone in Chukotka, Russia. We obtained 163 verified diatom sequence types and identified 176 diatom species morphologically. Raw and resampled read counts of diatom DNA sequences retrieved from our approach are and its taxonomic classifications are listed in the spread sheet: Huang_16KP_diat_JOPL.xlsx. The retrieved diatom sequences are listed in the fasta file: 16KP_diat_sequences.fasta. Raw and resampled valve counts of morphologically identified diatom taxa are summarized in the spreadsheet Huang_16KP_diat_JOPL.xlsx.
Supplement to:
Huang, S; Herzschuh, Ulrike; Pestryakova, Luidmila A; Zimmermann, Heike Hildegard; Davydova, Paraskovya V; Biskaborn, Boris K; Shevtsova, Iuliia; Stoof-Leichsenring, Kathleen Rosmarie (2020): Genetic and morphologic determination of diatom community composition in surface sediments from glacial and thermokarst lakes in the Siberian Arctic. Journal of Paleolimnology, https://doi.org/10.1007/s10933-020-00133-1
Further details:
Project(s):
Coverage:
Median Latitude: 66.809601 * Median Longitude: 166.844494 * South-bound Latitude: 65.894889 * West-bound Longitude: 163.401860 * North-bound Latitude: 67.812980 * East-bound Longitude: 168.738370
Date/Time Start: 2016-07-03T00:00:00 * Date/Time End: 2016-07-13T00:00:00
Minimum Elevation: 112.0 m * Maximum Elevation: 715.0 m
Event(s):
16-KP-01-L01 * Latitude: 67.376010 * Longitude: 168.254430 * Date/Time: 2016-07-03T00:00:00 * Elevation: 593.0 m * Location: Tschukotka, Sibiria, Russia * Campaign: RU-Land_2016_Keperveem (Keperveem_2016) * Basis: AWI Arctic Land Expedition * Method/Device: Water sampler, UWITEC (WSUWI) * Comment: Camp 1
16-KP-01-L02 * Latitude: 67.341480 * Longitude: 168.304430 * Elevation: 423.0 m * Location: Tschukotka, Sibiria, Russia * Campaign: RU-Land_2016_Keperveem (Keperveem_2016) * Basis: AWI Arctic Land Expedition * Method/Device: Water sampler, UWITEC (WSUWI)
16-KP-01-L03 * Latitude: 67.353030 * Longitude: 168.182310 * Date/Time: 2016-07-06T00:00:00 * Elevation: 489.0 m * Location: Tschukotka, Sibiria, Russia * Campaign: RU-Land_2016_Keperveem (Keperveem_2016) * Basis: AWI Arctic Land Expedition * Method/Device: Water sampler, UWITEC (WSUWI) * Comment: Camp 1
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Huang, Sichao | |||
| 2 | Station label | Station | Huang, Sichao | |||
| 3 | Latitude of event | Latitude | Huang, Sichao | |||
| 4 | Longitude of event | Longitude | Huang, Sichao | |||
| 5 | Elevation of event | Elevation | m | Huang, Sichao | ||
| 6 | Achnanthes spp. | Achnanthes spp. | # | Huang, Sichao | Counting, diatoms | |
| 7 | Achnanthidium minutissimum | A. minutissimum | # | Huang, Sichao | Counting, diatoms | |
| 8 | Actinella punctata | A. punctata | # | Huang, Sichao | Counting, diatoms | |
| 9 | Acutodesmus obliquus | A. obliquus | # | Huang, Sichao | Counting, diatoms | |
| 10 | Amphora fogediana | A. fogediana | # | Huang, Sichao | Counting, diatoms | |
| 11 | Amphora ovalis | A. ovalis | # | Huang, Sichao | Counting, diatoms | |
| 12 | Amphora pediculus | A. pediculus | # | Huang, Sichao | Counting, diatoms | |
| 13 | Amphora spp. | Amphora spp. | # | Huang, Sichao | Counting, diatoms | |
| 14 | Amphora staurosiroides | A. staurosiroides | # | Huang, Sichao | Counting, diatoms | |
| 15 | Anomoeoneis spp. | Anomoeoneis spp. | # | Huang, Sichao | Counting, diatoms | |
| 16 | Asterionella formosa | A. formosa | # | Huang, Sichao | Counting, diatoms | |
| 17 | Aulacoseira alpigena | A. alpigena | # | Huang, Sichao | Counting, diatoms | |
| 18 | Aulacoseira ambigua | A. ambigua | # | Huang, Sichao | Counting, diatoms | |
| 19 | Aulacoseira distans | A. distans | # | Huang, Sichao | Counting, diatoms | |
| 20 | Aulacoseira lirata | A. lirata | # | Huang, Sichao | Counting, diatoms | |
| 21 | Aulacoseira muzzanensis | A. muzzanensis | # | Huang, Sichao | Counting, diatoms | |
| 22 | Aulacoseira perglabra | A. perglabra | # | Huang, Sichao | Counting, diatoms | |
| 23 | Aulacoseira spp. | Aulacoseira spp. | # | Huang, Sichao | Counting, diatoms | |
| 24 | Aulacoseira subarctica | A. subarctica | # | Huang, Sichao | Counting, diatoms | |
| 25 | Aulacoseira tethera | A. tethera | # | Huang, Sichao | Counting, diatoms | |
| 26 | Aulacoseira valida | A. valida | # | Huang, Sichao | Counting, diatoms | |
| 27 | Brachysira brebissonii | B. brebissonii | # | Huang, Sichao | Counting, diatoms | |
| 28 | Brachysira vitrea | B. vitrea | # | Huang, Sichao | Counting, diatoms | |
| 29 | Brachysira zellensis | B. zellensis | # | Huang, Sichao | Counting, diatoms | |
| 30 | Caloneis baccilum | C. baccilum | # | Huang, Sichao | Counting, diatoms | |
| 31 | Caloneis silicula | C. silicula | # | Huang, Sichao | Counting, diatoms | |
| 32 | Camphilodiscus spp. | Camphilodiscus spp. | # | Huang, Sichao | Counting, diatoms | |
| 33 | Campylodiscus hibernicus | C. hibernicus | # | Huang, Sichao | Counting, diatoms | |
| 34 | Cavinula cocconeiformis | C. cocconeiformis | # | Huang, Sichao | Counting, diatoms | |
| 35 | Cavinula jaernefeltii | C. jaernefeltii | # | Huang, Sichao | Counting, diatoms | |
| 36 | Cavinula pseudoscutiformis | C. pseudoscutiformis | # | Huang, Sichao | Counting, diatoms | |
| 37 | Cocconeis placentula | C. placentula | # | Huang, Sichao | Counting, diatoms | |
| 38 | Cyclotella iris | C. iris | # | Huang, Sichao | Counting, diatoms | |
| 39 | Cyclotella spp. | Cyclotella spp. | # | Huang, Sichao | Counting, diatoms | |
| 40 | Cyclotella tripartita | C. tripartita | # | Huang, Sichao | Counting, diatoms | |
| 41 | Caracomia arctica | C. arctica | # | Huang, Sichao | Counting, diatoms | |
| 42 | Cymbella cesattii | C. cesattii | # | Huang, Sichao | Counting, diatoms | |
| 43 | Cymbella spp. | Cymbella spp. | # | Huang, Sichao | Counting, diatoms | |
| 44 | Cancris inaequalis | C. inaequalis | # | Huang, Sichao | Counting, diatoms | |
| 45 | Cymbella naviculiformis | C. naviculiformis | # | Huang, Sichao | Counting, diatoms | |
| 46 | Drymyomma elegans | D. elegans | # | Huang, Sichao | Counting, diatoms | |
| 47 | Diatomella balfouriana | D. balfouriana | # | Huang, Sichao | Counting, diatoms | |
| 48 | Diploneis elliptica | D. elliptica | # | Huang, Sichao | Counting, diatoms | |
| 49 | Diploneis finnica | D. finnica | # | Huang, Sichao | Counting, diatoms | |
| 50 | Diploneis marginestriata | D. marginestriata | # | Huang, Sichao | Counting, diatoms | |
| 51 | Diploneis modica | D. modica | # | Huang, Sichao | Counting, diatoms | |
| 52 | Diploneis oblongella | D. oblongella | # | Huang, Sichao | Counting, diatoms | |
| 53 | Diploneis ovalis | D. ovalis | # | Huang, Sichao | Counting, diatoms | |
| 54 | Encyonema alpinum | E. alpinum | # | Huang, Sichao | Counting, diatoms | |
| 55 | Encyonema cespitosum | E. cespitosum | # | Huang, Sichao | Counting, diatoms | |
| 56 | Eriophorum gracile | E. gracile | # | Huang, Sichao | Counting, diatoms | |
| 57 | Encyonema hebridicum | E. hebridicum | # | Huang, Sichao | Counting, diatoms | |
| 58 | Encyonema mesianum | E. mesianum | # | Huang, Sichao | Counting, diatoms | |
| 59 | Encyonema minutum | E. minutum | # | Huang, Sichao | Counting, diatoms | |
| 60 | Encyonema muelleri | E. muelleri | # | Huang, Sichao | Counting, diatoms | |
| 61 | Encyonema paucistriatum | E. paucistriatum | # | Huang, Sichao | Counting, diatoms | |
| 62 | Encyonema silesiacum | E. silesiacum | # | Huang, Sichao | Counting, diatoms | |
| 63 | Epithemia sorex | E. sorex | # | Huang, Sichao | Counting, diatoms | |
| 64 | Eucocconeis flexella | E. flexella | # | Huang, Sichao | Counting, diatoms | |
| 65 | Eunotia arculus | E. arculus | # | Huang, Sichao | Counting, diatoms | |
| 66 | Eunotia arcus | E. arcus | # | Huang, Sichao | Counting, diatoms | |
| 67 | Eunotia bilunaris | E. bilunaris | # | Huang, Sichao | Counting, diatoms | |
| 68 | Eunotia diadema | E. diadema | # | Huang, Sichao | Counting, diatoms | |
| 69 | Eunotia diodon | E. diodon | # | Huang, Sichao | Counting, diatoms | |
| 70 | Eunotia faba | E. faba | # | Huang, Sichao | Counting, diatoms | |
| 71 | Eunotia fallax | E. fallax | # | Huang, Sichao | Counting, diatoms | |
| 72 | Eunotia incisa | E. incisa | # | Huang, Sichao | Counting, diatoms | |
| 73 | Eunotia monodon | E. monodon | # | Huang, Sichao | Counting, diatoms | |
| 74 | Eunotia mucophila | E. mucophila | # | Huang, Sichao | Counting, diatoms | |
| 75 | Eunotia nymanniana | E. nymanniana | # | Huang, Sichao | Counting, diatoms | |
| 76 | Eunotia paludosa | E. paludosa | # | Huang, Sichao | Counting, diatoms | |
| 77 | Eunotia parallela | E. parallela | # | Huang, Sichao | Counting, diatoms | |
| 78 | Eunotia pectinalis | E. pectinalis | # | Huang, Sichao | Counting, diatoms | |
| 79 | Eunotia praerupta | E. praerupta | # | Huang, Sichao | Counting, diatoms | |
| 80 | Eunotia septentrionalis | E. septentrionalis | # | Huang, Sichao | Counting, diatoms | |
| 81 | Eunotia spp. | Eunotia spp. | # | Huang, Sichao | Counting, diatoms | |
| 82 | Eunotia sudetica | E. sudetica | # | Huang, Sichao | Counting, diatoms | |
| 83 | Eunotia tetraodon | E. tetraodon | # | Huang, Sichao | Counting, diatoms | |
| 84 | Eunotia triodon | E. triodon | # | Huang, Sichao | Counting, diatoms | |
| 85 | Fragilaria acus | F. acus | # | Huang, Sichao | Counting, diatoms | |
| 86 | Fragilaria capucina | F. capucina | # | Huang, Sichao | Counting, diatoms | |
| 87 | Fragilaria constricta | F. constricta | # | Huang, Sichao | Counting, diatoms | |
| 88 | Fragilaria lata | F. lata | # | Huang, Sichao | Counting, diatoms | |
| 89 | Fragilaria spp. | Fragilaria spp. | # | Huang, Sichao | Counting, diatoms | |
| 90 | Fragilaria tenera | F. tenera | # | Huang, Sichao | Counting, diatoms | |
| 91 | Fragilariforma virescens var. subsalina | F. virescens var. subsalina | # | Huang, Sichao | Counting, diatoms | |
| 92 | Frustulia rhomboides | F. rhomboides | # | Huang, Sichao | Counting, diatoms | |
| 93 | Geissleria ignota var. palustris | G. ignota var. palustris | # | Huang, Sichao | Counting, diatoms | |
| 94 | Geissleria schoenfeldii | G. schoenfeldii | # | Huang, Sichao | Counting, diatoms | |
| 95 | Gomphonema acuminatum | G. acuminatum | # | Huang, Sichao | Counting, diatoms | |
| 96 | Gomphonema affine | G. affine | # | Huang, Sichao | Counting, diatoms | |
| 97 | Gomphonema angustum | G. angustum | # | Huang, Sichao | Counting, diatoms | |
| 98 | Gomphonema clavatum | G. clavatum | # | Huang, Sichao | Counting, diatoms | |
| 99 | Gomphonema gracile | G. gracile | # | Huang, Sichao | Counting, diatoms | |
| 100 | Gomphonema insigne | G. insigne | # | Huang, Sichao | Counting, diatoms | |
| 101 | Gomphonema lagerheimii | G. lagerheimii | # | Huang, Sichao | Counting, diatoms | |
| 102 | Gomphonema olivaceum var. fonticola | G. olivaceum var. fonticola | # | Huang, Sichao | Counting, diatoms | |
| 103 | Gomphonema parvulum | G. parvulum | # | Huang, Sichao | Counting, diatoms | |
| 104 | Gomphonema spp. | Gomphonema spp. | # | Huang, Sichao | Counting, diatoms | |
| 105 | Gyrosigma attenuatum | G. attenuatum | # | Huang, Sichao | Counting, diatoms | |
| 106 | Gyrosigma spp. | Gyrosigma spp. | # | Huang, Sichao | Counting, diatoms | |
| 107 | Hannaea inaequidentata | H. inaequidentata | # | Huang, Sichao | Counting, diatoms | |
| 108 | Hantzschia amphioxys | H. amphioxys | # | Huang, Sichao | Counting, diatoms | |
| 109 | Hippodonta costulata | H. costulata | # | Huang, Sichao | Counting, diatoms | |
| 110 | Humidophola contenta | H. contenta | # | Huang, Sichao | Counting, diatoms | |
| 111 | Karayevia laterostrata | K. laterostrata | # | Huang, Sichao | Counting, diatoms | |
| 112 | Karayevia suchlandtii | K. suchlandtii | # | Huang, Sichao | Counting, diatoms | |
| 113 | Lindavia bodanica | L. bodanica | # | Huang, Sichao | Counting, diatoms | |
| 114 | Lindavia ocellata | L. ocellata | # | Huang, Sichao | Counting, diatoms | |
| 115 | Luticola mutica | L. mutica | # | Huang, Sichao | Counting, diatoms | |
| 116 | Martyana schulzii | M. schulzii | # | Huang, Sichao | Counting, diatoms | |
| 117 | Melosira moniliformis | M. moniliformis | # | Huang, Sichao | Counting, diatoms | |
| 118 | Meridion circulare | M. circulare | # | Huang, Sichao | Counting, diatoms | |
| 119 | Navicula libonensis | N. libonensis | # | Huang, Sichao | Counting, diatoms | |
| 120 | Navicula radiosa | N. radiosa | # | Huang, Sichao | Counting, diatoms | |
| 121 | Navicula spp. | Navicula spp. | # | Huang, Sichao | Counting, diatoms | |
| 122 | Navicula vulpina | N. vulpina | # | Huang, Sichao | Counting, diatoms | |
| 123 | Neidium bisulcatum | N. bisulcatum | # | Huang, Sichao | Counting, diatoms | |
| 124 | Neidium hitchcockii | N. hitchcockii | # | Huang, Sichao | Counting, diatoms | |
| 125 | Neidium iridis et forma vernales | N. iridis et f. vernales | # | Huang, Sichao | Counting, diatoms | |
| 126 | Neidium spp. | Neidium spp. | # | Huang, Sichao | Counting, diatoms | |
| 127 | Nitzschia acicularis | N. acicularis | # | Huang, Sichao | Counting, diatoms | |
| 128 | Nitzschia alpina | N. alpina | # | Huang, Sichao | Counting, diatoms | |
| 129 | Nitzschia amphibia | N. amphibia | # | Huang, Sichao | Counting, diatoms | |
| 130 | Nitzschia spp. | Nitzschia spp. | # | Huang, Sichao | Counting, diatoms | |
| 131 | Peronia fibula | P. fibula | # | Huang, Sichao | Counting, diatoms | |
| 132 | Peroniopsis heribaudii | P. heribaudii | # | Huang, Sichao | Counting, diatoms | |
| 133 | Pinnularia balfouriana | P. balfouriana | # | Huang, Sichao | Counting, diatoms | |
| 134 | Pinnularia borealis | P. borealis | # | Huang, Sichao | Counting, diatoms | |
| 135 | Pinnularia braunii | P. braunii | # | Huang, Sichao | Counting, diatoms | |
| 136 | Pinnularia brevicostata | P. brevicostata | # | Huang, Sichao | Counting, diatoms | |
| 137 | Pinnularia dactylus | P. dactylus | # | Huang, Sichao | Counting, diatoms | |
| 138 | Pinnularia gentilis | P. gentilis | # | Huang, Sichao | Counting, diatoms | |
| 139 | Pinnularia gibba | P. gibba | # | Huang, Sichao | Counting, diatoms | |
| 140 | Pinnularia hemiptera | P. hemiptera | # | Huang, Sichao | Counting, diatoms | |
| 141 | Pinnularia interrupta | P. interrupta | # | Huang, Sichao | Counting, diatoms | |
| 142 | Pinnularia microstauron | P. microstauron | # | Huang, Sichao | Counting, diatoms | |
| 143 | Pinnularia nodosa | P. nodosa | # | Huang, Sichao | Counting, diatoms | |
| 144 | Pinnularia obscura | P. obscura | # | Huang, Sichao | Counting, diatoms | |
| 145 | Pinnularia schwabei | P. schwabei | # | Huang, Sichao | Counting, diatoms | |
| 146 | Pinnularia stomatophora | P. stomatophora | # | Huang, Sichao | Counting, diatoms | |
| 147 | Pinnularia viridis | P. viridis | # | Huang, Sichao | Counting, diatoms | |
| 148 | Placoneis elginensis | P. elginensis | # | Huang, Sichao | Counting, diatoms | |
| 149 | Planothidium calcar | P. calcar | # | Huang, Sichao | Counting, diatoms | |
| 150 | Planothidium lanceolatum | P. lanceolatum | # | Huang, Sichao | Counting, diatoms | |
| 151 | Planothidium oestrupii | P. oestrupii | # | Huang, Sichao | Counting, diatoms | |
| 152 | Pliocaenicus spp. | Pliocaenicus spp. | # | Huang, Sichao | Counting, diatoms | |
| 153 | Psammothidium chlidanos | P. chlidanos | # | Huang, Sichao | Counting, diatoms | |
| 154 | Psammothidium rossii | P. rossii | # | Huang, Sichao | Counting, diatoms | |
| 155 | Pseudostaurosira brevistriata | P. brevistriata | # | Huang, Sichao | Counting, diatoms | |
| 156 | Pseudostaurosira parasitica | P. parasitica | # | Huang, Sichao | Counting, diatoms | |
| 157 | Pseudostaurosira pseudoconstruens | P. pseudoconstruens | # | Huang, Sichao | Counting, diatoms | |
| 158 | Rhoicosphenia abbreviata | R. abbreviata | # | Huang, Sichao | Counting, diatoms | |
| 159 | Rossithidium pusillum | R. pusillum | # | Huang, Sichao | Counting, diatoms | |
| 160 | Sellaphora bacillum | S. bacillum | # | Huang, Sichao | Counting, diatoms | |
| 161 | Sellaphora pupula | S. pupula | # | Huang, Sichao | Counting, diatoms | |
| 162 | Stauroneis anceps | S. anceps | # | Huang, Sichao | Counting, diatoms | |
| 163 | Sosane gracilis | S. gracilis | # | Huang, Sichao | Counting, diatoms | |
| 164 | Stauroneis phoenicenteron | S. phoenicenteron | # | Huang, Sichao | Counting, diatoms | |
| 165 | Stauroneis smithii | S. smithii | # | Huang, Sichao | Counting, diatoms | |
| 166 | Staurosira construens | S. construens | # | Huang, Sichao | Counting, diatoms | |
| 167 | Staurosira construens var. exigua | S. construens var. exigua | # | Huang, Sichao | Counting, diatoms | |
| 168 | Staurosira venter | S. venter | # | Huang, Sichao | Counting, diatoms | |
| 169 | Staurosirella pinnata | S. pinnata | # | Huang, Sichao | Counting, diatoms | |
| 170 | Stephanodiskus rotula | S. rotula | # | Huang, Sichao | Counting, diatoms | |
| 171 | Stephanodiscus spp. | Stephanodiscus spp. | # | Huang, Sichao | Counting, diatoms | |
| 172 | Surirella amphioxys | S. amphioxys | # | Huang, Sichao | Counting, diatoms | |
| 173 | Surirella angusta | S. angusta | # | Huang, Sichao | Counting, diatoms | |
| 174 | Surirella linearis var. helvetica | S. linearis var. helvetica | # | Huang, Sichao | Counting, diatoms | |
| 175 | Surirella robusta | S. robusta | # | Huang, Sichao | Counting, diatoms | |
| 176 | Synedra cyclopum | S. cyclopum | # | Huang, Sichao | Counting, diatoms | |
| 177 | Tabellaria fenestrata | T. fenestrata | # | Huang, Sichao | Counting, diatoms | |
| 178 | Tabellaria flocculosa | T. flocculosa | # | Huang, Sichao | Counting, diatoms | |
| 179 | Tetracyclus glans | T. glans | # | Huang, Sichao | Counting, diatoms | |
| 180 | Tryblionella angustata | T. angustata | # | Huang, Sichao | Counting, diatoms | |
| 181 | Ulnaria ulna | Ulnaria ulna | # | Huang, Sichao | Counting, diatoms |
License:
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